Stem-loop stu-MIR156a

Accession

MI0025962

Description

Solanum tuberosum stu-MIR156a precursor miRNA

Literature search

14 open access papers mention stu-MIR156a
(46 sentences)

Sequence

736538 reads, 17789.0 reads per million, 83 experiments

UUGACAGAAGAUAGAGAGCACagaugauaaagugcauggaaauugucugcaccuuacuccuuuguGCUCUUUAUUCUUCUGUCAUCa
.(((((((((((((((((((((((.(((((.(((((.((......))))))).))).)).))))))))))))).))))))))))...

Structure

--U          -             u  -   a     u  aa 
   UGACAGAAGA UAGAGAGCACaga ga uaa gugca gg  a
   |||||||||| ||||||||||||| || ||| ||||| ||   
   ACUGUCUUCU AUUUCUCGuguuu cu auu cacgu cu  u
aCU          U             c  c   c     -  gu 

Annotation confidence High

Genome context

JH137878.1: 427242-427328 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from stu-MIR156a

Mature stu-miR156a-5p

• Accession: MIMAT0031296
• Description: Solanum tuberosum stu-miR156a-5p mature miRNA
• Sequence: 1 - UUGACAGAAGAUAGAGAGCAC - 21
• Evidence: experimental ; Illumina [1]

Mature stu-miR156a-3p

• Accession: MIMAT0058241
• Description: Solanum tuberosum stu-miR156a-3p mature miRNA
• Sequence: 66 - GCUCUUUAUUCUUCUGUCAUC - 86
• Evidence: experimental ; unknown

References

1. PubMed ID: 23437348
   Identification and characterization of miRNA transcriptome in potato by high-throughput sequencing
   Zhang R, Marshall D, Bryan GJ, Hornyik C
   PLoS One (2013) 8:e57233