Stem-loop stu-MIR156b

Accession

MI0025963

Description

Solanum tuberosum stu-MIR156b precursor miRNA

Literature search

11 open access papers mention stu-MIR156b
(27 sentences)

Sequence

733471 reads, 17667.0 reads per million, 83 experiments

UUGACAGAAGAUAGAGAGCACaaaugauuaagugcaugaaaauuguaugcaccuuacuccuuuguGCUCUUUAUUCUUCUGUCAcca
.(((((((((((((((((((((((.((.((((((((((.......)))))).)))).)).))))))))))))).))))))))))...

Structure

--U          -             u  u    -      aa 
   UGACAGAAGA UAGAGAGCACaaa ga uaag ugcaug  a
   |||||||||| ||||||||||||| || |||| ||||||  a
   ACUGUCUUCU AUUUCUCGuguuu cu auuc acguau  u
acc          U             c  c    c      gu 

Annotation confidence Medium

Genome context

JH137878.1: 425005-425091 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from stu-MIR156b

Mature stu-miR156b-5p

• Accession: MIMAT0031297
• Description: Solanum tuberosum stu-miR156b-5p mature miRNA
• Sequence: 1 - UUGACAGAAGAUAGAGAGCAC - 21
• Evidence: experimental ; Illumina [1]

Mature stu-miR156b-3p

• Accession: MIMAT0058242
• Description: Solanum tuberosum stu-miR156b-3p mature miRNA
• Sequence: 66 - GCUCUUUAUUCUUCUGUCA - 84
• Evidence: experimental ; unknown

References

1. PubMed ID: 23437348
   Identification and characterization of miRNA transcriptome in potato by high-throughput sequencing
   Zhang R, Marshall D, Bryan GJ, Hornyik C
   PLoS One (2013) 8:e57233