Stem-loop stu-MIR156c

Accession

MI0025964

Description

Solanum tuberosum stu-MIR156c precursor miRNA

Literature search

12 open access papers mention stu-MIR156c
(28 sentences)

Sequence

729710 reads, 17524.0 reads per million, 83 experiments

UUGACAGAAGAUAGAGAGCACgaauaauggaagcugcaugcaccuuaauucuuugugCUCUCUAUUCUUCUGUCAUCa
.(((((((((((((((((((((((.(((((..((.....))..))..))).))))))))))))).))))))))))...

Structure

--U          -             u   --  aa  u 
   UGACAGAAGA UAGAGAGCACgaa aau  gg  gc g
   |||||||||| ||||||||||||| |||  ||  || c
   ACUGUCUUCU AUCUCUCguguuu uua  uc  cg a
aCU          U             c   au  ca  u 

Annotation confidence High

Genome context

JH138045.1: 664569-664646 [-]

Mature stu-miR156c-5p

• Accession: MIMAT0031298
• Description: Solanum tuberosum stu-miR156c-5p mature miRNA
• Sequence: 1 - UUGACAGAAGAUAGAGAGCAC - 21
• Evidence: experimental ; Illumina [1]

Mature stu-miR156c-3p

• Accession: MIMAT0058243
• Description: Solanum tuberosum stu-miR156c-3p mature miRNA
• Sequence: 58 - CUCUCUAUUCUUCUGUCAUC - 77
• Evidence: experimental ; unknown

References

1. PubMed ID: 23437348
   Identification and characterization of miRNA transcriptome in potato by high-throughput sequencing
   Zhang R, Marshall D, Bryan GJ, Hornyik C
   PLoS One (2013) 8:e57233