Stem-loop stu-MIR167a

Accession

MI0025969

Description

Solanum tuberosum stu-MIR167a precursor miRNA

Literature search

7 open access papers mention stu-MIR167a
(14 sentences)

Sequence

425170 reads, 15308.0 reads per million, 83 experiments

UGAAGCUGCCAGCAUGAUCUAaacuucccuuuuuaguucaaauaugauaugaggaaagaucAGAUCAUGUGGCAGCCUCACC
(((.(((((((.((((((((...(((.((((......(((....)))...)))).)))...))))))))))))))).)))..

Structure

--   A       G        Aaa   c    uuuagu   a 
  UGA GCUGCCA CAUGAUCU   cuu ccuu      uca a
  ||| ||||||| ||||||||   ||| ||||      |||  
  ACU CGACGGU GUACUAGA   gaa ggag      agu u
CC   C       -        cua   a    ---uau   a 

Annotation confidence Medium

Genome context

JH137937.1: 863406-863487 [-]

Mature stu-miR167a-5p

• Accession: MIMAT0031307
• Description: Solanum tuberosum stu-miR167a-5p mature miRNA
• Sequence: 1 - UGAAGCUGCCAGCAUGAUCUA - 21
• Evidence: experimental ; Illumina [1]

Mature stu-miR167a-3p

• Accession: MIMAT0031308
• Description: Solanum tuberosum stu-miR167a-3p mature miRNA
• Sequence: 62 - AGAUCAUGUGGCAGCCUCACC - 82
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 23437348
   Identification and characterization of miRNA transcriptome in potato by high-throughput sequencing
   Zhang R, Marshall D, Bryan GJ, Hornyik C
   PLoS One (2013) 8:e57233