Stem-loop stu-MIR479

Accession

MI0025971

Description

Solanum tuberosum stu-MIR479 precursor miRNA

Literature search

1 open access papers mention stu-MIR479
(1 sentences)

Sequence

87221 reads, 3130.0 reads per million, 60 experiments

gUGAUAUUGGUUCGGCUCACUaauuucugauucaugaaacagauuagagaUGAGCCGAACCAAUAUCACUC
(((((((((((((((((((....(((((((((.........))))))))))))))))))))))))))))..

Structure

--                   CUaa         cau 
  gUGAUAUUGGUUCGGCUCA    uuucugauu   g
  |||||||||||||||||||    |||||||||   a
  CACUAUAACCAAGCCGAGU    agagauuag   a
CU                   ----         aca 

Annotation confidence High

Genome context

JH137915.1: 152885-152955 [+]

Mature stu-miR479-5p

• Accession: MIMAT0058244
• Description: Solanum tuberosum stu-miR479-5p mature miRNA
• Sequence: 2 - UGAUAUUGGUUCGGCUCACU - 21
• Evidence: experimental ; unknown

Mature stu-miR479-3p

• Accession: MIMAT0031311
• Description: Solanum tuberosum stu-miR479-3p mature miRNA
• Sequence: 51 - UGAGCCGAACCAAUAUCACUC - 71
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 23437348
   Identification and characterization of miRNA transcriptome in potato by high-throughput sequencing
   Zhang R, Marshall D, Bryan GJ, Hornyik C
   PLoS One (2013) 8:e57233