Stem-loop stu-MIR477b

Accession

MI0025980

Description

Solanum tuberosum stu-MIR477b precursor miRNA

Sequence

ACUCUCCCUCAAAGGCUUCUGgcuuaaaaugccuuuugugcuaaugcuaGAGGUCUUUCGAGUGAGAGUGA
((((((.((((((((((((((((.......(((....).))....))))))))))))).))).))))))..

Structure

--      C   -             uuaaaau  - u 
  ACUCUC CUC AAAGGCUUCUGgc       gc c u
  |||||| ||| |||||||||||||       || |  
  UGAGAG GAG UUUCUGGAGaucg       cg g u
AG      U   C             ---uaau  u u 

Annotation confidence Not enough data

Genome context

JH137800.1: 3232231-3232301 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from stu-MIR477b

Mature stu-miR477b-5p

• Accession: MIMAT0031328
• Description: Solanum tuberosum stu-miR477b-5p mature miRNA
• Sequence: 1 - ACUCUCCCUCAAAGGCUUCUG - 21
• Evidence: experimental ; Illumina [1]

Mature stu-miR477b-3p

• Accession: MIMAT0031329
• Description: Solanum tuberosum stu-miR477b-3p mature miRNA
• Sequence: 50 - GAGGUCUUUCGAGUGAGAGUGA - 71
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 23437348
   Identification and characterization of miRNA transcriptome in potato by high-throughput sequencing
   Zhang R, Marshall D, Bryan GJ, Hornyik C
   PLoS One (2013) 8:e57233