Stem-loop stu-MIR530

Accession

MI0025981

Description

Solanum tuberosum stu-MIR530 precursor miRNA

Literature search

2 open access papers mention stu-MIR530
(2 sentences)

Sequence

651839 reads, 9855.0 reads per million, 83 experiments

UCUGCAUUUGCACCUGCACCUuagugaacgaauuuguuagcguauaauucaugcagaaAGGUGUUGGUGCUCAUGCAGAca
(((((((..(((((.(((((((..((...(((((...........)))))...))..))))))).)))))..)))))))..

Structure

--       UU     U       ag  aac     uguu 
  UCUGCAU  GCACC GCACCUu  ug   gaauu    a
  |||||||  ||||| |||||||  ||   |||||    g
  AGACGUA  CGUGG UGUGGAa  ac   cuuaa    c
ac       CU     U       ag  gua     uaug 

Annotation confidence High

Genome context

JH137965.1: 575880-575960 [+]

Mature stu-miR530-5p

• Accession: MIMAT0031330
• Description: Solanum tuberosum stu-miR530-5p mature miRNA
• Sequence: 1 - UCUGCAUUUGCACCUGCACCU - 21
• Evidence: experimental ; Illumina [1]

Mature stu-miR530-3p

• Accession: MIMAT0058245
• Description: Solanum tuberosum stu-miR530-3p mature miRNA
• Sequence: 59 - AGGUGUUGGUGCUCAUGCAGA - 79
• Evidence: experimental ; unknown

References

1. PubMed ID: 23437348
   Identification and characterization of miRNA transcriptome in potato by high-throughput sequencing
   Zhang R, Marshall D, Bryan GJ, Hornyik C
   PLoS One (2013) 8:e57233