Stem-loop stu-MIR398b

Accession

MI0025983

Description

Solanum tuberosum stu-MIR398b precursor miRNA

Literature search

5 open access papers mention stu-MIR398b
(6 sentences)

Sequence

491361 reads, 6239.0 reads per million, 83 experiments

gagugugccuuagaACACAGGUGUAUUUUGGUCUacuccuguuuuggacccaaaauaugcuUGUGUUCUCAGGUCACCCCU
..(((.((((.((((((((((((((((((((((((.........)))).)))))))))))))))))))).)))))))....

Structure

--ga   u    u                    -    cuc 
    gug gccu agaACACAGGUGUAUUUUGG UCUa   c
    ||| |||| |||||||||||||||||||| ||||   u
    CAC UGGA UCUUGUGUucguauaaaacc aggu   g
UCCC   -    C                    c    uuu 

Annotation confidence Low

Genome context

JH138056.1: 472688-472768 [-]

Mature stu-miR398b-5p

• Accession: MIMAT0031333
• Description: Solanum tuberosum stu-miR398b-5p mature miRNA
• Sequence: 15 - ACACAGGUGUAUUUUGGUCU - 34
• Evidence: experimental ; Illumina [1]

Mature stu-miR398b-3p

• Accession: MIMAT0031334
• Description: Solanum tuberosum stu-miR398b-3p mature miRNA
• Sequence: 62 - UGUGUUCUCAGGUCACCCCU - 81
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 23437348
   Identification and characterization of miRNA transcriptome in potato by high-throughput sequencing
   Zhang R, Marshall D, Bryan GJ, Hornyik C
   PLoS One (2013) 8:e57233