Stem-loop stu-MIR156h

Accession

MI0025993

Description

Solanum tuberosum stu-MIR156h precursor miRNA

Gene family

MIPF0000008; MIR156

Literature search

9 open access papers mention stu-MIR156h
(22 sentences)

Sequence

UGACAGAAGAGAGUGAGCACacaugguguauucaagcaugauguuuacaugcuugaagcuaugcguGCUCACUGCUCUAUCUGUCACC
((((((((((((((((((((.((((((...((((((((((.......)))))))))))))))).))))))))).)))).)))))))..

Structure

--       -    -         a      gua          au 
  UGACAGA AGAG AGUGAGCAC cauggu   uucaagcaug  g
  ||||||| |||| ||||||||| ||||||   ||||||||||  u
  ACUGUCU UCUC UCACUCGug guaucg   aaguucguac  u
CC       A    G         c      ---          au 

Annotation confidence Not enough data

Genome context

JH137923.1: 518360-518447 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from stu-MIR156h

Mature stu-miR156h-5p

• Accession: MIMAT0031351
• Description: Solanum tuberosum stu-miR156h-5p mature miRNA
• Sequence: 1 - UGACAGAAGAGAGUGAGCAC - 20
• Evidence: experimental ; Illumina [1]

Mature stu-miR156h-3p

• Accession: MIMAT0031352
• Description: Solanum tuberosum stu-miR156h-3p mature miRNA
• Sequence: 67 - GCUCACUGCUCUAUCUGUCACC - 88
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 23437348
   Identification and characterization of miRNA transcriptome in potato by high-throughput sequencing
   Zhang R, Marshall D, Bryan GJ, Hornyik C
   PLoS One (2013) 8:e57233