Stem-loop stu-MIR156i

Accession

MI0025994

Description

Solanum tuberosum stu-MIR156i precursor miRNA

Gene family

MIPF0000008; MIR156

Literature search

9 open access papers mention stu-MIR156i
(22 sentences)

Sequence

UGACAGAAGAGAGUGAGCACacaugauguuuucucgcaugauguuuauaugcuugaaacuauguguGCUCACUGCUCUAUCUGUCACC
(((((((((((((((((((((((((..((((.(..(((((.......)))))..))))))))))))))))))).)))).)))))))..

Structure

--       -    -              au    u uc     au 
  UGACAGA AGAG AGUGAGCACacaug  guuu c  gcaug  g
  ||||||| |||| ||||||||||||||  |||| |  |||||  u
  ACUGUCU UCUC UCACUCGuguguau  caaa g  cguau  u
CC       A    G              --    - uu     au 

Annotation confidence Not enough data

Genome context

JH137923.1: 518632-518719 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from stu-MIR156i

Mature stu-miR156i-5p

• Accession: MIMAT0031353
• Description: Solanum tuberosum stu-miR156i-5p mature miRNA
• Sequence: 1 - UGACAGAAGAGAGUGAGCAC - 20
• Evidence: experimental ; Illumina [1]

Mature stu-miR156i-3p

• Accession: MIMAT0031354
• Description: Solanum tuberosum stu-miR156i-3p mature miRNA
• Sequence: 67 - GCUCACUGCUCUAUCUGUCACC - 88
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 23437348
   Identification and characterization of miRNA transcriptome in potato by high-throughput sequencing
   Zhang R, Marshall D, Bryan GJ, Hornyik C
   PLoS One (2013) 8:e57233