Stem-loop stu-MIR156j

Accession

MI0025995

Description

Solanum tuberosum stu-MIR156j precursor miRNA

Gene family

MIPF0000008; MIR156

Literature search

9 open access papers mention stu-MIR156j
(22 sentences)

Sequence

UGACAGAAGAGAGUGAGCACacaugguguuuucuggcaugauguuuauauuuaugcuugaaacuauguguGCUCACUGCUCUAUCUGUCACC
(((((((((((((((((((((((((((...(((.(((((((.........))))))).))))))))))))))))))).)))).)))))))..

Structure

--       -    -                guu   u       ugu 
  UGACAGA AGAG AGUGAGCACacauggu   uuc ggcauga   u
  ||||||| |||| ||||||||||||||||   ||| |||||||   u
  ACUGUCU UCUC UCACUCGuguguauca   aag ucguauu   a
CC       A    G                ---   u       uau 

Annotation confidence Not enough data

Genome context

JH137923.1: 550610-550701 [+]

Mature stu-miR156j-5p

• Accession: MIMAT0031355
• Description: Solanum tuberosum stu-miR156j-5p mature miRNA
• Sequence: 1 - UGACAGAAGAGAGUGAGCAC - 20
• Evidence: experimental ; Illumina [1]

Mature stu-miR156j-3p

• Accession: MIMAT0031356
• Description: Solanum tuberosum stu-miR156j-3p mature miRNA
• Sequence: 71 - GCUCACUGCUCUAUCUGUCACC - 92
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 23437348
   Identification and characterization of miRNA transcriptome in potato by high-throughput sequencing
   Zhang R, Marshall D, Bryan GJ, Hornyik C
   PLoS One (2013) 8:e57233