Stem-loop stu-MIR169a

Accession

MI0025997

Description

Solanum tuberosum stu-MIR169a precursor miRNA

Literature search

7 open access papers mention stu-MIR169a
(11 sentences)

Sequence

1069 reads, 169.0 reads per million, 75 experiments

UAGCCAAGGAUGACUUGCCUgcaucauuaauuaauucuugaggcuagcuugugauauaucauguauaugacauguauacaagcauucuucuuugauggccAGGCAGUCUCCUUGGCUACu
((((((((((.((((.((((((((((.............((((...(((((((((((.((((....)))).)))).)))))))...))))..)))))..)))))))))))))))))))..

Structure

--          U    U     --     uuaauuaauucuu    cua       -    a    g 
  UAGCCAAGGA GACU GCCUg  cauca             gagg   gcuugug auau ucau u
  |||||||||| |||| |||||  |||||             ||||   ||||||| |||| ||||  
  AUCGGUUCCU CUGA CGGAc  guagu             cuuc   cgaacau ugua agua a
uC          -    -     cg     -----------uu    uua       a    c    u 

Annotation confidence High

Genome context

JH137832.1: 2197227-2197346 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from stu-MIR169a

Mature stu-miR169a-5p

• Accession: MIMAT0031359
• Description: Solanum tuberosum stu-miR169a-5p mature miRNA
• Sequence: 1 - UAGCCAAGGAUGACUUGCCU - 20
• Evidence: experimental ; Illumina [1]

Mature stu-miR169a-3p

• Accession: MIMAT0031360
• Description: Solanum tuberosum stu-miR169a-3p mature miRNA
• Sequence: 101 - AGGCAGUCUCCUUGGCUAC - 119
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 23437348
   Identification and characterization of miRNA transcriptome in potato by high-throughput sequencing
   Zhang R, Marshall D, Bryan GJ, Hornyik C
   PLoS One (2013) 8:e57233