Stem-loop stu-MIR169b

Accession

MI0025998

Description

Solanum tuberosum stu-MIR169b precursor miRNA

Literature search

6 open access papers mention stu-MIR169b
(9 sentences)

Sequence

1068 reads, 169.0 reads per million, 75 experiments

UAGCCAAGGAUGACUUGCCUgcaucauuaguucuugagguuugugauauaucauguauaugccauguauacaagcauucuucuuugauggccAGGCAGUCUCCUUGGCUACu
((((((((((.((((.(((((..(((((((.....((((((((((((((..(((....)))..)))).))))))).)))....))))))).)))))))))))))))))))..

Structure

--          U    U     ca       uucuu   -       -    au   g 
  UAGCCAAGGA GACU GCCUg  ucauuag     gag guuugug auau  cau u
  |||||||||| |||| |||||  |||||||     ||| ||||||| ||||  |||  
  AUCGGUUCCU CUGA CGGAc  gguaguu     cuu cgaacau ugua  gua a
uC          -    -     -c       -ucuu   a       a    cc   u 

Annotation confidence High

Genome context

JH137832.1: 2204840-2204951 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from stu-MIR169b

Mature stu-miR169b-5p

• Accession: MIMAT0031361
• Description: Solanum tuberosum stu-miR169b-5p mature miRNA
• Sequence: 1 - UAGCCAAGGAUGACUUGCCU - 20
• Evidence: experimental ; Illumina [1]

Mature stu-miR169b-3p

• Accession: MIMAT0031362
• Description: Solanum tuberosum stu-miR169b-3p mature miRNA
• Sequence: 93 - AGGCAGUCUCCUUGGCUAC - 111
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 23437348
   Identification and characterization of miRNA transcriptome in potato by high-throughput sequencing
   Zhang R, Marshall D, Bryan GJ, Hornyik C
   PLoS One (2013) 8:e57233