Stem-loop stu-MIR169c

Accession

MI0025999

Description

Solanum tuberosum stu-MIR169c precursor miRNA

Literature search

5 open access papers mention stu-MIR169c
(7 sentences)

Sequence

1047 reads, 171.0 reads per million, 74 experiments

UAGCCAAGGAUGACUUGCCUgcuccauagucuaaaauguguuuaaucaccuuuuaguuugguuucaGGCAGUCUCCUUGGCUACc
((((((((((.((((.(((((..(((....((((((.(((......))).))))))..)))...)))))))))))))))))))..

Structure

--          U    U     -cu   uagu      u   uu 
  UAGCCAAGGA GACU GCCUg   cca    cuaaaa gug  u
  |||||||||| |||| |||||   |||    |||||| |||   
  AUCGGUUCCU CUGA CGGac   ggu    gauuuu cac  a
cC          -    -     uuu   --uu      c   ua 

Annotation confidence High

Genome context

JH138085.1: 295136-295220 [-]

Clustered miRNAs

2 other miRNAs are < 10 kb from stu-MIR169c

Mature stu-miR169c-5p

• Accession: MIMAT0031363
• Description: Solanum tuberosum stu-miR169c-5p mature miRNA
• Sequence: 1 - UAGCCAAGGAUGACUUGCCU - 20
• Evidence: experimental ; Illumina [1]

Mature stu-miR169c-3p

• Accession: MIMAT0031364
• Description: Solanum tuberosum stu-miR169c-3p mature miRNA
• Sequence: 67 - GGCAGUCUCCUUGGCUAC - 84
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 23437348
   Identification and characterization of miRNA transcriptome in potato by high-throughput sequencing
   Zhang R, Marshall D, Bryan GJ, Hornyik C
   PLoS One (2013) 8:e57233