Stem-loop stu-MIR169f

Accession

MI0026002

Description

Solanum tuberosum stu-MIR169f precursor miRNA

Literature search

4 open access papers mention stu-MIR169f
(6 sentences)

Sequence

2594 reads, 149.0 reads per million, 78 experiments

UAGCCAAGGAUGACUUGCCUuucaucaaugccuuguaaaaaggaaauuaauuaaaauccuuuuuaugguauugggaaaaugagUGGCAAGCAUCCUUGGCGACU
..((((((((((.((((((.((((((((((((..((((((((((............))))))))))))))))).....))))).))))))))))))))))....

Structure

--UA          A      U     -----       uu          aauua 
    GCCAAGGAUG CUUGCC uucau     caaugcc  guaaaaagga     a
    |||||||||| |||||| |||||     |||||||  ||||||||||      
    CGGUUCCUAC GAACGG gagua     guuaugg  uauuuuuccu     u
UCAG          -      U     aaagg       --          aaaau 

Annotation confidence High

Genome context

JH138318.1: 169894-169997 [-]

Mature stu-miR169f-5p

• Accession: MIMAT0031369
• Description: Solanum tuberosum stu-miR169f-5p mature miRNA
• Sequence: 1 - UAGCCAAGGAUGACUUGCCU - 20
• Evidence: experimental ; Illumina [1]

Mature stu-miR169f-3p

• Accession: MIMAT0031370
• Description: Solanum tuberosum stu-miR169f-3p mature miRNA
• Sequence: 84 - UGGCAAGCAUCCUUGGCGACU - 104
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 23437348
   Identification and characterization of miRNA transcriptome in potato by high-throughput sequencing
   Zhang R, Marshall D, Bryan GJ, Hornyik C
   PLoS One (2013) 8:e57233