Stem-loop stu-MIR169g

Accession

MI0026003

Description

Solanum tuberosum stu-MIR169g precursor miRNA

Literature search

5 open access papers mention stu-MIR169g
(7 sentences)

Sequence

1694 reads, 154.0 reads per million, 79 experiments

UAGCCAAGGAUGACUUGCCUacauaauacuaccaauuucaagcugaaaugcuacuuguuugguugacauguuaGGCAGUCAUCUAUGGCUUUG
.(((((.((((((((.((((((((......(((((.....(((......)))......)))))....))).))))))))))))).)))))...

Structure

--U     A        U     -   aauacu     -uuuca   ug 
   AGCCA GGAUGACU GCCUa cau      accaa      agc  a
   ||||| |||||||| ||||| |||      |||||      |||   
   UCGGU UCUACUGA CGGau gua      ugguu      ucg  a
GUU     A        -     u   --cagu     uguuca   ua 

Annotation confidence Medium

Genome context

JH138318.1: 159255-159347 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from stu-MIR169g

Mature stu-miR169g-5p

• Accession: MIMAT0031371
• Description: Solanum tuberosum stu-miR169g-5p mature miRNA
• Sequence: 1 - UAGCCAAGGAUGACUUGCCU - 20
• Evidence: experimental ; Illumina [1]

Mature stu-miR169g-3p

• Accession: MIMAT0058247
• Description: Solanum tuberosum stu-miR169g-3p mature miRNA
• Sequence: 74 - GGCAGUCAUCUAUGGCUUUG - 93
• Evidence: experimental ; unknown

References

1. PubMed ID: 23437348
   Identification and characterization of miRNA transcriptome in potato by high-throughput sequencing
   Zhang R, Marshall D, Bryan GJ, Hornyik C
   PLoS One (2013) 8:e57233