Stem-loop stu-MIR169h

Accession

MI0026004

Description

Solanum tuberosum stu-MIR169h precursor miRNA

Literature search

4 open access papers mention stu-MIR169h
(6 sentences)

Sequence

1468 reads, 149.0 reads per million, 78 experiments

UAGCCAAGGAUGACUUGCCUauguucaaaaccaauuuugaaauugguaauuauauuauauaGGCAGUCAUCUUGGGCUAUc
(((((.(((((((((.((((((((.....(((((((....))))))).........))))))))))))))))).)))))..

Structure

--     A         U        ----ucaaa       u 
  UAGCC AGGAUGACU GCCUaugu         accaauu u
  ||||| ||||||||| ||||||||         |||||||  
  AUCGG UUCUACUGA CGGauaua         ugguuaa g
cU     G         -        uuauauuaa       a 

Annotation confidence High

Genome context

JH138318.1: 155222-155302 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from stu-MIR169h

Mature stu-miR169h-5p

• Accession: MIMAT0031372
• Description: Solanum tuberosum stu-miR169h-5p mature miRNA
• Sequence: 1 - UAGCCAAGGAUGACUUGCCU - 20
• Evidence: experimental ; Illumina [1]

Mature stu-miR169h-3p

• Accession: MIMAT0058248
• Description: Solanum tuberosum stu-miR169h-3p mature miRNA
• Sequence: 62 - GGCAGUCAUCUUGGGCUAU - 80
• Evidence: experimental ; unknown

References

1. PubMed ID: 23437348
   Identification and characterization of miRNA transcriptome in potato by high-throughput sequencing
   Zhang R, Marshall D, Bryan GJ, Hornyik C
   PLoS One (2013) 8:e57233