miRBase entry: osa-MIR6249b

Stem-loop osa-MIR6249b


Accession
MI0026009
Description
Oryza sativa osa-MIR6249b precursor miRNA


Sequence

35950 reads, 158.0 reads per million, 137 experiments
ccaucccgcgCGUGAAGAGCUCGCCGGCGGCcauggccaucuccaccgccgcgccgauGCUGCCUUGCCGACGGCGAUUGGG
((((((((((.((((.((((((((((((((...(((......))))))))).).))).))).).)))))).))).)).))).

Structure
-   -  -   -  C    A -   -   - -      Cca   cc 
 cca uc ccg cg GUGA G AGC UCG C CGGCGG   ugg  a
 ||| || ||| || |||| | ||| ||| | ||||||   |||   
 GGU AG GGC GC CGUU C UCG agc g gccgcc   acc  u
G   U  C   A  -    C G   u   c c      ---   uc 


Annotation confidence Low
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Genome context
4: 30286459-30286540 [+]

Database links

Mature osa-miR6249b-5p

Accession MIMAT0031378
Description Oryza sativa osa-miR6249b-5p mature miRNA
Sequence 11 - CGUGAAGAGCUCGCCGGCGGC - 31
Evidence experimental
Illumina [1]
Database links

Mature osa-miR6249b-3p

Accession MIMAT0056330
Description Oryza sativa osa-miR6249b-3p mature miRNA
Sequence 59 - GCUGCCUUGCCGACGGCGAUUGGG - 82
Evidence experimental
unknown

References

  1. PubMed ID: 22585409
    Novel miRNAs in the control of arsenite levels in rice
    "Liu Q"
    "Funct Integr Genomics (2012) 12:649-658