Stem-loop ppe-MIR156c

Accession

MI0026058

Description

Prunus persica ppe-MIR156c precursor miRNA

Literature search

14 open access papers mention ppe-MIR156c
(61 sentences)

Sequence

44433 reads, 673.0 reads per million, 20 experiments

ucucuguggauguggaauauaguaaaguaaaauaggggaagcucaagcuugaagcuacUGACAGAAGAGAGUGAGCACacaaacgcaggcaauuguauaaaagcauauaccuuggugcggugcguGCUCACUUCUCUCUCUGUCAGCUGcugcugccgcccuugcccuuccagucuuugaucucacuuaaauucacagaga
(((((((((((...........(((((......((((.(((.....((....(((..(((((((((((((((((((((.((..((((..(((..(((((......))))).))).)))).)).)))))))).))))).))))))))..)))...))....))).))))......)))))...........)))))))))))

Structure

           guggaauauag     uaaaau    g   cucaa  uuga   ua        -     -        a  aa    gg   uu     aa 
ucucuguggau           uaaag      aggg aag     gc    agc  cUGACAGA AGAGA GUGAGCAC ca  cgca  caa  guaua  a
|||||||||||           |||||      |||| |||     ||    |||  |||||||| ||||| |||||||| ||  ||||  |||  |||||   
agagacacuua           guuuc      uccc uuc     cg    ucG  GACUGUCU UCUCU CACUCGug gu  gcgu  guu  cauau  g
           aauucacucua     ugaccu    g   -ccgc  -ucg   UC        C     U        c  -g    -g   -c     ac 

Annotation confidence High

Genome context

chrG7: 21702295-21702495 [+]

Mature ppe-miR156c-5p

• Accession: MIMAT0031430
• Description: Prunus persica ppe-miR156c-5p mature miRNA
• Sequence: 59 - UGACAGAAGAGAGUGAGCAC - 78
• Evidence: experimental ; Illumina [1]

Mature ppe-miR156c-3p

• Accession: MIMAT0058498
• Description: Prunus persica ppe-miR156c-3p mature miRNA
• Sequence: 126 - GCUCACUUCUCUCUCUGUCAGCUG - 149
• Evidence: experimental ; unknown

References

1. PubMed ID: 22909020
   Unique expression, processing regulation, and regulatory network of peach (Prunus persica) miRNAs
   Zhu H, Xia R, Zhao B, An YQ, Dardick CD, Callahan AM, Liu Z
   BMC Plant Biol (2012) 12:149