Stem-loop ppe-MIR156d

Accession

MI0026059

Description

Prunus persica ppe-MIR156d precursor miRNA

Literature search

14 open access papers mention ppe-MIR156d
(61 sentences)

Sequence

43483 reads, 659.0 reads per million, 20 experiments

ggguaauggaggUGACAGAAGAGAGUGAGCACacaagguguuuucuugcaugguggguuucaugcuugaagcuuugcguGCUUACUCUCUAUCUGUCACCcacuuuucuc
(((.((.(..((((((((((((((((((((((.((((((...(((..((((((......))))))..))))))))).))))))))))))).)))))))))..).)).)))

Structure

   u  u ga         -             a      guu   uu      ug 
ggg aa g  ggUGACAGA AGAGAGUGAGCAC caaggu   uuc  gcaugg  g
||| || |  ||||||||| ||||||||||||| ||||||   |||  ||||||   
cuc uu c  CCACUGUCU UCUCUCAUUCGug guuucg   aag  cguacu  g
   u  u ac         A             c      ---   uu      uu 

Annotation confidence High

Genome context

chrG1: 35792894-35793003 [-]

Mature ppe-miR156d-5p

• Accession: MIMAT0031431
• Description: Prunus persica ppe-miR156d-5p mature miRNA
• Sequence: 13 - UGACAGAAGAGAGUGAGCAC - 32
• Evidence: experimental ; Illumina [1]

Mature ppe-miR156d-3p

• Accession: MIMAT0058499
• Description: Prunus persica ppe-miR156d-3p mature miRNA
• Sequence: 80 - GCUUACUCUCUAUCUGUCACC - 100
• Evidence: experimental ; unknown

References

1. PubMed ID: 22909020
   Unique expression, processing regulation, and regulatory network of peach (Prunus persica) miRNAs
   Zhu H, Xia R, Zhao B, An YQ, Dardick CD, Callahan AM, Liu Z
   BMC Plant Biol (2012) 12:149