Stem-loop ppe-MIR156f

Accession

MI0026061

Description

Prunus persica ppe-MIR156f precursor miRNA

Literature search

14 open access papers mention ppe-MIR156f
(61 sentences)

Sequence

46621 reads, 1089.0 reads per million, 20 experiments

agcuaguagaggaggcauaggugauuuugcUGACAGAAGAUAGAGAGCACagauggugaaaugcaugaacaaggcagcaucucaauccuuuguGCUCUCUAUGCUUCUGUCAUcaccuucauccccuuaccuccccuauuugcu
(((.(((((.(((((....(((((...((.(((((((((((((((((((((((.(((((.((((.((.......)))))).)))..)))))))))))))))).))))))))).))...)))))......))))).))))).)))

Structure

   u     a     --caua     uuu  c         -              u  --   a    a  aa 
agc aguag ggagg      gguga   ug UGACAGAAG AUAGAGAGCACaga gg  uga augc ug  c
||| ||||| |||||      |||||   || ||||||||| |||||||||||||| ||  ||| |||| ||  a
ucg uuauc ccucc      cuacu   ac ACUGUCUUC UAUCUCUCGuguuu cc  acu uacg ac  a
   u     c     auuccc     ucc  U         G              -  ua   c    -  gg 

Annotation confidence High

Genome context

chrG3: 16336244-16336387 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from ppe-MIR156f

Mature ppe-miR156f-5p

• Accession: MIMAT0031433
• Description: Prunus persica ppe-miR156f-5p mature miRNA
• Sequence: 31 - UGACAGAAGAUAGAGAGCAC - 50
• Evidence: experimental ; Illumina [1]

Mature ppe-miR156f-3p

• Accession: MIMAT0058501
• Description: Prunus persica ppe-miR156f-3p mature miRNA
• Sequence: 94 - GCUCUCUAUGCUUCUGUCAU - 113
• Evidence: experimental ; unknown

References

1. PubMed ID: 22909020
   Unique expression, processing regulation, and regulatory network of peach (Prunus persica) miRNAs
   Zhu H, Xia R, Zhao B, An YQ, Dardick CD, Callahan AM, Liu Z
   BMC Plant Biol (2012) 12:149