Stem-loop ppe-MIR156h

Accession

MI0026063

Description

Prunus persica ppe-MIR156h precursor miRNA

Literature search

14 open access papers mention ppe-MIR156h
(61 sentences)

Sequence

363568 reads, 7106.0 reads per million, 20 experiments

agguuuugUUGACAGAAGAUAGAGAGCACagaugaagaaaugcauggacaucgacauggcaggcagcaucucucuccuuuguGCUCUCUAUGCUUCUGUCAUcacaccu
((((..((.(((((((((((((((((((((((.(((((.((((.((..(((....))).....)))))).))).)).)))))))))))))).))))))))).)).))))

Structure

    uu  U         -              u  -   a    a  ---ga   c 
aggu  ug UGACAGAAG AUAGAGAGCACaga ga aga augc ug     cau g
||||  || ||||||||| |||||||||||||| || ||| |||| ||     |||  
ucca  ac ACUGUCUUC UAUCUCUCGuguuu cu ucu uacg ac     gua a
    -c  U         G              c  c   c    -  ggacg   c 

Annotation confidence High

Genome context

chrG3: 16336810-16336918 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from ppe-MIR156h

Mature ppe-miR156h-5p

• Accession: MIMAT0031435
• Description: Prunus persica ppe-miR156h-5p mature miRNA
• Sequence: 9 - UUGACAGAAGAUAGAGAGCAC - 29
• Evidence: experimental ; Illumina [1]

Mature ppe-miR156h-3p

• Accession: MIMAT0058503
• Description: Prunus persica ppe-miR156h-3p mature miRNA
• Sequence: 83 - GCUCUCUAUGCUUCUGUCAU - 102
• Evidence: experimental ; unknown

References

1. PubMed ID: 22909020
   Unique expression, processing regulation, and regulatory network of peach (Prunus persica) miRNAs
   Zhu H, Xia R, Zhao B, An YQ, Dardick CD, Callahan AM, Liu Z
   BMC Plant Biol (2012) 12:149