Stem-loop ppe-MIR159

Accession

MI0026065

Description

Prunus persica ppe-MIR159 precursor miRNA

Literature search

11 open access papers mention ppe-MIR159
(36 sentences)

Sequence

4240362 reads, 172124.0 reads per million, 20 experiments

ggagcaGAGCUCCUUGAAGUCCAAUAGaaggucuugcuggguggauugagcugcugagcuauggaucccacagcccuaucucagaucaucagaggaauaggcuuguggcuugcauaucucaggagcugcauuaccuguguuagaucuuugUUUGGAUUGAAGGGAGCUCUAcacc
((.(.((((((((((..(((((((..((((((((.(((((((((..((((((.(((((.((((.(..((((((.((((((((.((...)).)))..))))).))))))..).)))).))))).)))).))))))))).)).))))))))..)))))))..)))))))))).).))

Structure

  a c          GA       UA        u  -       au  -    g     c    g uc      c     --   a  u 
gg g aGAGCUCCUU  AGUCCAA  Gaaggucu gc ugggugg  ug agcu cugag uaug a  ccacag ccuau  cuc ga  
|| | ||||||||||  |||||||  |||||||| || |||||||  || |||| ||||| |||| |  |||||| |||||  ||| || c
cc c UCUCGAGGGA  UUAGGUU  uuucuaga ug guccauu  ac ucga gacuc auac u  gguguu ggaua  gag cu  
  a A          AG       Ug        u  u       --  g    g     u    g uc      c     ag   a  a 

Annotation confidence High

Genome context

chrG5: 17557077-17557251 [+]

Mature ppe-miR159-5p

• Accession: MIMAT0058505
• Description: Prunus persica ppe-miR159-5p mature miRNA
• Sequence: 7 - GAGCUCCUUGAAGUCCAAUAG - 27
• Evidence: experimental ; unknown

Mature ppe-miR159-3p

• Accession: MIMAT0031437
• Description: Prunus persica ppe-miR159-3p mature miRNA
• Sequence: 151 - UUUGGAUUGAAGGGAGCUCUA - 171
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 22909020
   Unique expression, processing regulation, and regulatory network of peach (Prunus persica) miRNAs
   Zhu H, Xia R, Zhao B, An YQ, Dardick CD, Callahan AM, Liu Z
   BMC Plant Biol (2012) 12:149