Stem-loop ppe-MIR160a

Accession

MI0026066

Description

Prunus persica ppe-MIR160a precursor miRNA

Literature search

9 open access papers mention ppe-MIR160a
(25 sentences)

Sequence

21640 reads, 1019.0 reads per million, 20 experiments

uuggacgugaggcuugaagugaaaggugaauuggguuaUGCCUGGCUCCCUGUAUGCCAcaagcggaagcucaaucugguucuagauuggcuacugcgggugGCGUACGAGGAGCCAAGCAUAcccucuaucuuuaucucucucucucucucuuguucaa
.((((((.((((...((((.((.(((((((..((((.((((.(((((((.((((((((((..((((.(((.(((((((....)))))))))).))))..)))))))))).))))))).))))))))......))))))).)).)).)))))).)))))).

Structure

u      u    cuu  -  u  a       ----uu    u    C       C          aa    a   u       g 
 uggacg gagg   ga ag ga aggugaa      gggu aUGC UGGCUCC UGUAUGCCAc  gcgg agc caaucug u
 |||||| ||||   || || || |||||||      |||| |||| ||||||| ||||||||||  |||| ||| |||||||  
 acuugu cucu   cu uc cu ucuauuu      cccA UACG ACCGAGG GCAUGCGgug  cguc ucg guuagau u
a      u    ---  c  u  c       cuaucu    -    A       A          gg    a   -       c 

Annotation confidence High

Genome context

chrG4: 5325283-5325442 [+]

Mature ppe-miR160a-5p

• Accession: MIMAT0031438
• Description: Prunus persica ppe-miR160a-5p mature miRNA
• Sequence: 39 - UGCCUGGCUCCCUGUAUGCCA - 59
• Evidence: experimental ; Illumina [1]

Mature ppe-miR160a-3p

• Accession: MIMAT0058506
• Description: Prunus persica ppe-miR160a-3p mature miRNA
• Sequence: 103 - GCGUACGAGGAGCCAAGCAUA - 123
• Evidence: experimental ; unknown

References

1. PubMed ID: 22909020
   Unique expression, processing regulation, and regulatory network of peach (Prunus persica) miRNAs
   Zhu H, Xia R, Zhao B, An YQ, Dardick CD, Callahan AM, Liu Z
   BMC Plant Biol (2012) 12:149