Stem-loop ppe-MIR162

Accession

MI0026068

Description

Prunus persica ppe-MIR162 precursor miRNA

Literature search

4 open access papers mention ppe-MIR162
(5 sentences)

Sequence

67424 reads, 6127.0 reads per million, 20 experiments

ggaauaauucuuuuggugggguggagucacuGGAGGCAGCGGUUCAUCGAUCUcuuccugagauuuguugugaaaauacaaaacaugaaucggUCGAUAAACCUCUGCAUCCAGcgcucacucucucauucuuguguuuuucu
((((.(((.(...(((.((((((.((.(.(((((.((((.((((.(((((((..(((.((...(((((.........))))).)).)))..))))))).)))).)))).))))).))))))))).))).....).))).))))

Structure

    u   u --uuu   u      g  u a     G    C    C       Uc   c  aga     ugu 
ggaa aau c     ugg ggggug ag c cuGGA GCAG GGUU AUCGAUC  uuc ug   uuugu   g
|||| ||| |     ||| |||||| || | ||||| |||| |||| |||||||  ||| ||   |||||   a
ucuu uug g     acu ucucac uc g GACCU CGUC CCAA UAGCUgg  aag ac   aaaca   a
    u   u uucuu   c      -  - c     A    U    A       cu   u  --a     uaa 

Annotation confidence High

Genome context

chrG5: 16880472-16880614 [-]

Mature ppe-miR162-5p

• Accession: MIMAT0058508
• Description: Prunus persica ppe-miR162-5p mature miRNA
• Sequence: 32 - GGAGGCAGCGGUUCAUCGAUCU - 53
• Evidence: experimental ; unknown

Mature ppe-miR162-3p

• Accession: MIMAT0031440
• Description: Prunus persica ppe-miR162-3p mature miRNA
• Sequence: 94 - UCGAUAAACCUCUGCAUCCAG - 114
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 22909020
   Unique expression, processing regulation, and regulatory network of peach (Prunus persica) miRNAs
   Zhu H, Xia R, Zhao B, An YQ, Dardick CD, Callahan AM, Liu Z
   BMC Plant Biol (2012) 12:149