Stem-loop ppe-MIR164a

Accession

MI0026069

Description

Prunus persica ppe-MIR164a precursor miRNA

Literature search

6 open access papers mention ppe-MIR164a
(20 sentences)

Sequence

28490 reads, 852.0 reads per million, 20 experiments

gaUGGAGAAGCAGGGCACGUGCAuuucuaacucaugcgcauauacagagauauauuauuacucucaauaguucaccugccuaucaaucaagucucugaaagcuuuucuuucuauaucucauauccagugaugaguuaguuauuCAUGUGCCCCUCUUCCCCAUC
(((((.((((..(((((((((.((..(((((((((.(((.......((((((((............((((.........)))).............(((((.....))))))))))))).......))))))))))))..)).)))))))))..)))).)))))

Structure

     A    CA         C  uu         g   auauaca        uuauuacucucaauaguucaccugccuaucaaucaagucucu     c 
gaUGG GAAG  GGGCACGUG Au  cuaacucau cgc       gagauaua                                          gaaag u
||||| ||||  ||||||||| ||  ||||||||| |||       ||||||||                                          ||||| u
CUACC CUUC  CCCGUGUAC ua  gauugagua gug       cucuauau                                          cuuuc u
     C    UC         u  uu         -   accuaua        ------------------------------------------     u 

Annotation confidence High

Genome context

chrG6: 26574904-26575067 [+]

Mature ppe-miR164a-5p

• Accession: MIMAT0031441
• Description: Prunus persica ppe-miR164a-5p mature miRNA
• Sequence: 3 - UGGAGAAGCAGGGCACGUGCA - 23
• Evidence: experimental ; Illumina [1]

Mature ppe-miR164a-3p

• Accession: MIMAT0058509
• Description: Prunus persica ppe-miR164a-3p mature miRNA
• Sequence: 144 - CAUGUGCCCCUCUUCCCCAUC - 164
• Evidence: experimental ; unknown

References

1. PubMed ID: 22909020
   Unique expression, processing regulation, and regulatory network of peach (Prunus persica) miRNAs
   Zhu H, Xia R, Zhao B, An YQ, Dardick CD, Callahan AM, Liu Z
   BMC Plant Biol (2012) 12:149