Stem-loop ppe-MIR164b

Accession

MI0026070

Description

Prunus persica ppe-MIR164b precursor miRNA

Literature search

6 open access papers mention ppe-MIR164b
(20 sentences)

Sequence

17220 reads, 706.0 reads per million, 20 experiments

gagcggguguggcuccuuguUGGAGAAGCAGGGCACGUGCAaaccccuuuggcuuugcuuuugcuuuucaaaccaaaaaagcuaguaaguuguugCACGUGCUCCCCUUCUCCAACAuggguuccucaccuauuc
(((.(((((.((..((((((((((((((..((((((((((((......((((((((...((((.....)))).....)))))))).......))))))))))))..))))))))))).)))..)).))))).)))

Structure

   c     u  cu   -           CA            -accccu        --gcu    c 
gag gggug gg  ccu uguUGGAGAAG  GGGCACGUGCAa       uuggcuuu     uuug u
||| ||||| ||  ||| |||||||||||  ||||||||||||       ||||||||     |||| u
cuu uccac cc  ggg ACAACCUCUUC  CUCGUGCACguu       gaucgaaa     aaac u
   a     u  uu   u           CC            guugaau        aaacc    u 

Annotation confidence High

Genome context

chrG8: 22112016-22112150 [-]

Mature ppe-miR164b-5p

• Accession: MIMAT0031442
• Description: Prunus persica ppe-miR164b-5p mature miRNA
• Sequence: 21 - UGGAGAAGCAGGGCACGUGCA - 41
• Evidence: experimental ; Illumina [1]

Mature ppe-miR164b-3p

• Accession: MIMAT0058510
• Description: Prunus persica ppe-miR164b-3p mature miRNA
• Sequence: 96 - CACGUGCUCCCCUUCUCCAACA - 117
• Evidence: experimental ; unknown

References

1. PubMed ID: 22909020
   Unique expression, processing regulation, and regulatory network of peach (Prunus persica) miRNAs
   Zhu H, Xia R, Zhao B, An YQ, Dardick CD, Callahan AM, Liu Z
   BMC Plant Biol (2012) 12:149