Stem-loop ppe-MIR164d

Accession

MI0026072

Description

Prunus persica ppe-MIR164d precursor miRNA

Literature search

6 open access papers mention ppe-MIR164d
(22 sentences)

Sequence

278 reads, 69.0 reads per million, 19 experiments

agggagaaugauccaugcUGGAGAAGCAGGGCACAUGCUagauauaucagcuucaauguucugagaauuuugCAUGUGCUCUAGCUCUCCAGCuuggacucucucccu
(((((((..(.((((.((((((((.(((((((((((((.((((...((((..........))))..)))).))))))))))).)))))))))).)))))..)))))))

Structure

       au a    u        A  -           U    aua    cuuc 
agggaga  g ucca gcUGGAGA GC AGGGCACAUGC agau   ucag    a
|||||||  | |||| |||||||| || ||||||||||| ||||   ||||     
ucccucu  c aggu CGACCUCU CG UCUCGUGUACg uuua   aguc    a
       cu -    u        -  A           u    -ag    uugu 

Annotation confidence High

Genome context

chrG3: 2645966-2646073 [-]

Mature ppe-miR164d-5p

• Accession: MIMAT0031444
• Description: Prunus persica ppe-miR164d-5p mature miRNA
• Sequence: 19 - UGGAGAAGCAGGGCACAUGCU - 39
• Evidence: experimental ; Illumina [1]

Mature ppe-miR164d-3p

• Accession: MIMAT0058512
• Description: Prunus persica ppe-miR164d-3p mature miRNA
• Sequence: 73 - CAUGUGCUCUAGCUCUCCAGC - 93
• Evidence: experimental ; unknown

References

1. PubMed ID: 22909020
   Unique expression, processing regulation, and regulatory network of peach (Prunus persica) miRNAs
   Zhu H, Xia R, Zhao B, An YQ, Dardick CD, Callahan AM, Liu Z
   BMC Plant Biol (2012) 12:149