Stem-loop ppe-MIR166c

Accession

MI0026075

Description

Prunus persica ppe-MIR166c precursor miRNA

Literature search

7 open access papers mention ppe-MIR166c
(36 sentences)

Sequence

30443648 reads, 536419.0 reads per million, 20 experiments

ggaagcauguccuuuugaggGGAAUGUUGUCUGGCACGAGGccaccaaucuugguuccuuccaaauuucaauccauaccgaucuuugaucagaauuuacguucuacguacagacgcucagggacuguguauguuaguguccUCGGACCAGGCUUCAUUCCCCucaauucacugcuuuc
(((((((.((....((((((((((((..((((((..(((((.(((.....((((......)))).........(((((((.(((((((........(((((...))))).......))))))).)).)))))...))).)))))..))))))..))))))))))))...)))))))))

Structure

       u  ccuu            UU      CA     c   caaucuugguuccuuccaaauuucaauc     -  a       ucagaauu     u 
ggaagca gu    uugaggGGAAUG  GUCUGG  CGAGG cac                            cauac cg ucuuuga        uacgu  
||||||| ||    ||||||||||||  ||||||  ||||| |||                            ||||| || |||||||        ||||| c
cuuucgu ca    aacuCCCCUUAC  CGGACC  GCUcc gug                            guaug gu agggacu        augca  
       -  -cuu            UU      AG     u   -------------------------auu     u  c       -cgcagac     u 

Annotation confidence High

Genome context

chrG2: 29691966-29692143 [+]

Mature ppe-miR166c-5p

• Accession: MIMAT0058515
• Description: Prunus persica ppe-miR166c-5p mature miRNA
• Sequence: 21 - GGAAUGUUGUCUGGCACGAGG - 41
• Evidence: experimental ; unknown

Mature ppe-miR166c-3p

• Accession: MIMAT0031447
• Description: Prunus persica ppe-miR166c-3p mature miRNA
• Sequence: 142 - UCGGACCAGGCUUCAUUCCCC - 162
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 22909020
   Unique expression, processing regulation, and regulatory network of peach (Prunus persica) miRNAs
   Zhu H, Xia R, Zhao B, An YQ, Dardick CD, Callahan AM, Liu Z
   BMC Plant Biol (2012) 12:149