Stem-loop ppe-MIR166d

Accession

MI0026076

Description

Prunus persica ppe-MIR166d precursor miRNA

Literature search

7 open access papers mention ppe-MIR166d
(36 sentences)

Sequence

11932814 reads, 235651.0 reads per million, 20 experiments

gaagcuuuagcuuuugaggGGAAUGUUGUCUGGCUCGAGGacacuuuuccuugaucuguauuucuuauagaucaaccuguauauuuauaucuagguauacauauauauggcuuuuggugaauuagugucgUCGGACCAGGCUUCAUUCCCCccaauuuauggcuuc
((((((.(((...(((.((((((((..((((((.((((.((((((.((((((((((((((.....))))))))).(((((((((.(((((....))))).))))))).)).....)).)))..)))))).)))).))))))..)))))))).))).))).))))))

Structure

      u   cuu   a        UU      C    G      -u   -  ugaucuguauuucuuauagaucaa  -       u     c 
gaagcu uag   uug ggGGAAUG  GUCUGG UCGA Gacacu  uuc cu                        cc uguauau uauau u
|||||| |||   ||| ||||||||  |||||| |||| ||||||  ||| ||                        || ||||||| |||||  
cuucgg auu   aac CCCCUUAC  CGGACC GGCU cuguga  aag gg                        gg auauaua auaug a
      u   --u   c        UU      A    g      uu   u  -------------------uuuuc  u       c     g 

Annotation confidence High

Genome context

chrG2: 23268458-23268623 [+]

Mature ppe-miR166d-5p

• Accession: MIMAT0058516
• Description: Prunus persica ppe-miR166d-5p mature miRNA
• Sequence: 20 - GGAAUGUUGUCUGGCUCGAGG - 40
• Evidence: experimental ; unknown

Mature ppe-miR166d-3p

• Accession: MIMAT0031448
• Description: Prunus persica ppe-miR166d-3p mature miRNA
• Sequence: 131 - UCGGACCAGGCUUCAUUCCCC - 151
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 22909020
   Unique expression, processing regulation, and regulatory network of peach (Prunus persica) miRNAs
   Zhu H, Xia R, Zhao B, An YQ, Dardick CD, Callahan AM, Liu Z
   BMC Plant Biol (2012) 12:149