Stem-loop ppe-MIR166e

Accession

MI0026077

Description

Prunus persica ppe-MIR166e precursor miRNA

Literature search

7 open access papers mention ppe-MIR166e
(36 sentences)

Sequence

11931391 reads, 234947.0 reads per million, 20 experiments

guuuuugaggGGAAUGUUGUCUGGCUCGAGGccccuaacuagauccaugaucuucaucucaauugaugucaauuuuaaucaacaauauagacucaguugagacagaucauuugguucuacauuuagugacgUCGGACCAGGCUUCAUUCCCCccaauuau
....(((.((((((((..((((((.((((.(.(.((((.((((.(((((((((...((((((((((.(((...................))))))))))))).))))))..))).))))...)))).).).)))).))))))..)))))))).)))....

Structure

guuu   a        UU      C    G c c    --c    u   --      uca          u   aauuuuaa 
    uug ggGGAAUG  GUCUGG UCGA G c cuaa   uaga cca  ugaucu   ucucaauuga guc        u
    ||| ||||||||  |||||| |||| | | ||||   |||| |||  ||||||   |||||||||| |||        c
    aac CCCCUUAC  CGGACC GGCU c g gauu   aucu ggu  acuaga   agaguugacu cag        a
uauu   c        UU      A    g a u    uac    u   uu      --c          -   auauaaca 

Annotation confidence High

Genome context

chrG5: 12576396-12576555 [+]

Mature ppe-miR166e-5p

• Accession: MIMAT0058517
• Description: Prunus persica ppe-miR166e-5p mature miRNA
• Sequence: 11 - GGAAUGUUGUCUGGCUCGAGG - 31
• Evidence: experimental ; unknown

Mature ppe-miR166e-3p

• Accession: MIMAT0031449
• Description: Prunus persica ppe-miR166e-3p mature miRNA
• Sequence: 132 - UCGGACCAGGCUUCAUUCCCC - 152
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 22909020
   Unique expression, processing regulation, and regulatory network of peach (Prunus persica) miRNAs
   Zhu H, Xia R, Zhao B, An YQ, Dardick CD, Callahan AM, Liu Z
   BMC Plant Biol (2012) 12:149