Stem-loop ppe-MIR167a

Accession

MI0026078

Description

Prunus persica ppe-MIR167a precursor miRNA

Literature search

11 open access papers mention ppe-MIR167a
(27 sentences)

Sequence

275945 reads, 19595.0 reads per million, 20 experiments

gucacaagggaaaaagUGAAGCUGCCAGCAUGAUCUagcuuugguuacagauaucauacauauaucuauauagauaguucauuaguaacccuagcuaGGUCAUGCUCUGACAGCCUCACUccuucccauuugggac
(((.((((((((..(((((.(((((.((((((((((((((..((((((((((((.......)))))).....((....))....))))))..))))))))))))))..).)))).)))))..)))))..))).)))

Structure

   a   --     aa     A    - -C              uu      -----------------      ca 
guc caa  gggaa  agUGA GCUG C  AGCAUGAUCUagcu  gguuac                 agauau  u
||| |||  |||||  ||||| |||| |  ||||||||||||||  ||||||                 ||||||  a
cag guu  cccuu  UCACU CGAC G  UCGUACUGGaucga  ccaaug                 ucuaua  c
   g   ua     cc     C    A UC              uc      auuacuugauagauaua      ua 

Annotation confidence High

Genome context

chrG8: 20761711-20761846 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from ppe-MIR167a

Mature ppe-miR167a-5p

• Accession: MIMAT0031450
• Description: Prunus persica ppe-miR167a-5p mature miRNA
• Sequence: 17 - UGAAGCUGCCAGCAUGAUCU - 36
• Evidence: experimental ; Illumina [1]

Mature ppe-miR167a-3p

• Accession: MIMAT0058518
• Description: Prunus persica ppe-miR167a-3p mature miRNA
• Sequence: 98 - GGUCAUGCUCUGACAGCCUCACU - 120
• Evidence: experimental ; unknown

References

1. PubMed ID: 22909020
   Unique expression, processing regulation, and regulatory network of peach (Prunus persica) miRNAs
   Zhu H, Xia R, Zhao B, An YQ, Dardick CD, Callahan AM, Liu Z
   BMC Plant Biol (2012) 12:149