Stem-loop ppe-MIR167b

Accession

MI0026079

Description

Prunus persica ppe-MIR167b precursor miRNA

Literature search

10 open access papers mention ppe-MIR167b
(25 sentences)

Sequence

279279 reads, 19868.0 reads per million, 20 experiments

gguuuugcuugcuucucguggaccaccagcaguUGAAGCUGCCAGCAUGAUCUAaacuucccuuuuggccaguugaggaaagaucaGAUCAUGUGGUAGCUUCAccuguugacgggaucacgaaaacgaacuuuacu
(((...(.(((.((.((((((.((..((((((.(((((((((((.((((((((...(((.((((..........)))).)))...))))))))))))))))))).))))))..))..)))))).))))).)...)))

Structure

   uuu c   c  c      -a  ac      u           G        Aaa   c    uugg 
ggu   g uug uu ucgugg  cc  cagcag UGAAGCUGCCA CAUGAUCU   cuu ccuu    c
|||   | ||| || ||||||  ||  |||||| ||||||||||| ||||||||   ||| ||||     
uca   c agc aa agcacu  gg  guuguc ACUUCGAUGGU GUACUAGa   gaa ggag    c
   uuu a   -  a      ag  ca      c           -        cua   a    uuga 

Annotation confidence High

Genome context

chrG8: 20759419-20759555 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from ppe-MIR167b

Mature ppe-miR167b-5p

• Accession: MIMAT0031451
• Description: Prunus persica ppe-miR167b-5p mature miRNA
• Sequence: 34 - UGAAGCUGCCAGCAUGAUCUA - 54
• Evidence: experimental ; Illumina [1]

Mature ppe-miR167b-3p

• Accession: MIMAT0058519
• Description: Prunus persica ppe-miR167b-3p mature miRNA
• Sequence: 87 - GAUCAUGUGGUAGCUUCA - 104
• Evidence: experimental ; unknown

References

1. PubMed ID: 22909020
   Unique expression, processing regulation, and regulatory network of peach (Prunus persica) miRNAs
   Zhu H, Xia R, Zhao B, An YQ, Dardick CD, Callahan AM, Liu Z
   BMC Plant Biol (2012) 12:149