Stem-loop ppe-MIR167c

Accession

MI0026080

Description

Prunus persica ppe-MIR167c precursor miRNA

Literature search

10 open access papers mention ppe-MIR167c
(25 sentences)

Sequence

637802 reads, 47659.0 reads per million, 20 experiments

gucgucgugcacuuccaacuguUGAAGCUGCCAGCAUGAUCUGAGcuuucuuuuuuauaagaaagGCUAGAUCAUGUGGUAGCUUCAUCuguugacuggagcaugguagac
(((.((((((.((..((((.(.(((((((((((.(((((((((..(((((((......)))))))..)))))))))))))))))))).).))))...)).))))))..)))

Structure

   -g      a  -uc    u u           G         AG       uu 
guc  ucgugc cu   caac g UGAAGCUGCCA CAUGAUCUG  cuuucuu  u
|||  |||||| ||   |||| | ||||||||||| |||||||||  |||||||   
cag  gguacg gg   guug C ACUUCGAUGGU GUACUAGAU  gaaagaa  u
   au      a  uca    u U           -         CG       ua 

Annotation confidence High

Genome context

chrG6: 29520818-29520928 [+]

Mature ppe-miR167c-5p

• Accession: MIMAT0031452
• Description: Prunus persica ppe-miR167c-5p mature miRNA
• Sequence: 23 - UGAAGCUGCCAGCAUGAUCUGAG - 45
• Evidence: experimental ; Illumina [1]

Mature ppe-miR167c-3p

• Accession: MIMAT0058520
• Description: Prunus persica ppe-miR167c-3p mature miRNA
• Sequence: 66 - GCUAGAUCAUGUGGUAGCUUCAUC - 89
• Evidence: experimental ; unknown

References

1. PubMed ID: 22909020
   Unique expression, processing regulation, and regulatory network of peach (Prunus persica) miRNAs
   Zhu H, Xia R, Zhao B, An YQ, Dardick CD, Callahan AM, Liu Z
   BMC Plant Biol (2012) 12:149