Stem-loop ppe-MIR168

Accession

MI0026082

Description

Prunus persica ppe-MIR168 precursor miRNA

Literature search

7 open access papers mention ppe-MIR168
(20 sentences)

Sequence

67868 reads, 2127.0 reads per million, 20 experiments

uucaguuacuggcggucucuaauUCGCUUGGUGCAGGUCGGGAAcugcuucgcguuuagggccuuuuuuucguacaagaccuaugagccagguggcgccaugguauuggucggugggugcgaaauggguCCCGCCUUGCAUCAACUGAAUcggagaccgcggugaagag
.....((((((.((((((((.(((((.((((((((((.(((((.(((.(((((.......((((.....(((..(((.(((.(((.(((....)))..)))))).)))..))).))))))))).))).))))).)))))))))).))))).))))))))))))))....

Structure

uucag      g        a     C          U     A   c     guuuagg    uuuuu   ua   g   u   -a   a 
     uuacug cggucucu auUCG UUGGUGCAGG CGGGA cug uucgc       gccu     ucg  caa acc aug  gcc g
     |||||| |||||||| ||||| |||||||||| ||||| ||| |||||       ||||     |||  ||| ||| |||  |||  
     aguggc gccagagg UAAGU AACUACGUUC GCCCu ggu aagcg       uggg     ggc  guu ugg uac  cgg g
-gaga      -        c     C          C     g   a     -------    ----u   ug   a   -   cg   u 

Annotation confidence High

Genome context

chrG5: 1588871-1589039 [-]

Mature ppe-miR168-5p

• Accession: MIMAT0031454
• Description: Prunus persica ppe-miR168-5p mature miRNA
• Sequence: 24 - UCGCUUGGUGCAGGUCGGGAA - 44
• Evidence: experimental ; Illumina [1]

Mature ppe-miR168-3p

• Accession: MIMAT0058522
• Description: Prunus persica ppe-miR168-3p mature miRNA
• Sequence: 130 - CCCGCCUUGCAUCAACUGAAU - 150
• Evidence: experimental ; unknown

References

1. PubMed ID: 22909020
   Unique expression, processing regulation, and regulatory network of peach (Prunus persica) miRNAs
   Zhu H, Xia R, Zhao B, An YQ, Dardick CD, Callahan AM, Liu Z
   BMC Plant Biol (2012) 12:149