Stem-loop ppe-MIR169a

Accession

MI0026083

Description

Prunus persica ppe-MIR169a precursor miRNA

Literature search

7 open access papers mention ppe-MIR169a
(22 sentences)

Sequence

347 reads, 26.0 reads per million, 13 experiments

agucucagaguguuuacaugaagcacaagagauuggauugCAGCCAAGGAUGACUUGCCGGcauuuacaguacucuugcuuuaugcaguugagguuugcCGGCAAGUUGUCUUUGGCUAcauuuugcucucuucuucucaugucagccucugagacu
((((((((((.(((.((((((.(...((((((.((((.((.((((((((((((((((((((((.........(((((((.....))))..)))...)))))))))))))))))))))).)).)))).))))))...))))))).)))))))))))))

Structure

          u   u      a cac      u    u  C                      uuuacagua   --    u 
agucucagag guu acauga g   aagaga ugga ug AGCCAAGGAUGACUUGCCGGca         cuc  uugc u
|||||||||| ||| |||||| |   |||||| |||| || ||||||||||||||||||||||         |||  |||| u
ucagagucuc cga uguacu c   uucucu guuu ac UCGGUUUCUGUUGAACGGCcgu         gag  gacg a
          -   c      - uuc      c    u  A                      ------uug   uu    u 

Annotation confidence High

Genome context

chrG1: 5674587-5674743 [+]

Mature ppe-miR169a-5p

• Accession: MIMAT0031455
• Description: Prunus persica ppe-miR169a-5p mature miRNA
• Sequence: 41 - CAGCCAAGGAUGACUUGCCGG - 61
• Evidence: experimental ; Illumina [1]

Mature ppe-miR169a-3p

• Accession: MIMAT0058523
• Description: Prunus persica ppe-miR169a-3p mature miRNA
• Sequence: 100 - CGGCAAGUUGUCUUUGGCUA - 119
• Evidence: experimental ; unknown

References

1. PubMed ID: 22909020
   Unique expression, processing regulation, and regulatory network of peach (Prunus persica) miRNAs
   Zhu H, Xia R, Zhao B, An YQ, Dardick CD, Callahan AM, Liu Z
   BMC Plant Biol (2012) 12:149