Stem-loop ppe-MIR169b

Accession

MI0026084

Description

Prunus persica ppe-MIR169b precursor miRNA

Literature search

7 open access papers mention ppe-MIR169b
(22 sentences)

Sequence

348 reads, 26.0 reads per million, 13 experiments

agucucagaguguuuacaugaagcacuagagauuggauugCAGCCAAGGAUGACUUGCCGGcauuuacaguacucuugcuuuaugcagcugagguuugcCGGCAAGUUGUCUUUGGCUAcauuuugcucucuucuucucaugucagccucugagacu
((((((((((.(((.((((((......(((((.((((.((.((((((((((((((((((((((....((((.....(((.....))))))).....)))))))))))))))))))))).)).)))).))))).....)))))).)))))))))))))

Structure

          u   u      agcacu     u    u  C                      -uuua    acucu   u 
agucucagag guu acauga      agaga ugga ug AGCCAAGGAUGACUUGCCGGca     cagu     ugc u
|||||||||| ||| ||||||      ||||| |||| || ||||||||||||||||||||||     ||||     ||| u
ucagagucuc cga uguacu      ucucu guuu ac UCGGUUUCUGUUGAACGGCcgu     gucg     acg a
          -   c      -cuucu     c    u  A                      uugga    -----   u 

Annotation confidence High

Genome context

chrG1: 5647462-5647618 [+]

Clustered miRNAs

2 other miRNAs are < 10 kb from ppe-MIR169b

Mature ppe-miR169b-5p

• Accession: MIMAT0031456
• Description: Prunus persica ppe-miR169b-5p mature miRNA
• Sequence: 41 - CAGCCAAGGAUGACUUGCCGG - 61
• Evidence: experimental ; Illumina [1]

Mature ppe-miR169b-3p

• Accession: MIMAT0058524
• Description: Prunus persica ppe-miR169b-3p mature miRNA
• Sequence: 100 - CGGCAAGUUGUCUUUGGCUA - 119
• Evidence: experimental ; unknown

References

1. PubMed ID: 22909020
   Unique expression, processing regulation, and regulatory network of peach (Prunus persica) miRNAs
   Zhu H, Xia R, Zhao B, An YQ, Dardick CD, Callahan AM, Liu Z
   BMC Plant Biol (2012) 12:149