Stem-loop ppe-MIR169b

Accession

MI0026084

Description

Prunus persica ppe-MIR169b precursor miRNA

Literature search

7 open access papers mention ppe-MIR169b
(20 sentences)

Sequence

agucucagaguguuuacaugaagcacuagagauuggauugCAGCCAAGGAUGACUUGCCGGcauuuacaguacucuugcuuuaugcagcugagguuugccggcaaguugucuuuggcuacauuuugcucucuucuucucaugucagccucugagacu
((((((((((.(((.((((((......(((((.((((.((.((((((((((((((((((((((....((((.....(((.....))))))).....)))))))))))))))))))))).)).)))).))))).....)))))).)))))))))))))

Structure

          u   u      agcacu     u    u  C                      -uuua    acucu   u 
agucucagag guu acauga      agaga ugga ug AGCCAAGGAUGACUUGCCGGca     cagu     ugc u
|||||||||| ||| ||||||      ||||| |||| || ||||||||||||||||||||||     ||||     ||| u
ucagagucuc cga uguacu      ucucu guuu ac ucgguuucuguugaacggccgu     gucg     acg a
          -   c      -cuucu     c    u  a                      uugga    -----   u 

Annotation confidence Not enough data

Genome context

chrG1: 5647462-5647618 [+]

Clustered miRNAs

2 other miRNAs are < 10 kb from ppe-MIR169b

Mature ppe-miR169b

• Accession: MIMAT0031456
• Description: Prunus persica ppe-miR169b mature miRNA
• Sequence: 41 - CAGCCAAGGAUGACUUGCCGG - 61
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 22909020
   Unique expression, processing regulation, and regulatory network of peach (Prunus persica) miRNAs
   Zhu H, Xia R, Zhao B, An YQ, Dardick CD, Callahan AM, Liu Z
   BMC Plant Biol (2012) 12:149