Stem-loop ppe-MIR169c

Accession

MI0026085

Description

Prunus persica ppe-MIR169c precursor miRNA

Literature search

8 open access papers mention ppe-MIR169c
(23 sentences)

Sequence

345 reads, 26.0 reads per million, 12 experiments

ucaucuaaagucuugcauguggaaaugaggcguguggugCAGCCAAGGAUGACUUGCCGGcaauacuuagcuugucauucuccaaugcaugcauguuguugugagaaugagcugaucGGCAAGUCGUCUCUGGCUACauuauugccuccuuuucucaugcuagauuuaugauga
(((((..((((((.(((((.(((((.((((((.((((((.(((((.((((((((((((((......(((((...(((((((((((((((....)).))))).))))))))))))))))))))))))))).))))).)))))))))))).))))).))))).))))))..)))))

Structure

     ua      u     u     u      u      C     A              caauac     uug        -     -  u 
ucauc  aagucu gcaug ggaaa gaggcg guggug AGCCA GGAUGACUUGCCGG      uuagc   ucauucuc caaug ca g
|||||  |||||| ||||| ||||| |||||| |||||| ||||| ||||||||||||||      |||||   |||||||| ||||| ||  
aguag  uuuaga cguac cuuuu cuccgu uauuaC UCGGU UCUGCUGAACGGcu      agucg   aguaagag guugu gu c
     ua      u     u     c      -      A     C              ------     ---        u     u  a 

Annotation confidence High

Genome context

chrG3: 24916225-24916398 [-]

Mature ppe-miR169c-5p

• Accession: MIMAT0031457
• Description: Prunus persica ppe-miR169c-5p mature miRNA
• Sequence: 40 - CAGCCAAGGAUGACUUGCCGG - 60
• Evidence: experimental ; Illumina [1]

Mature ppe-miR169c-3p

• Accession: MIMAT0058525
• Description: Prunus persica ppe-miR169c-3p mature miRNA
• Sequence: 118 - GGCAAGUCGUCUCUGGCUAC - 137
• Evidence: experimental ; unknown

References

1. PubMed ID: 22909020
   Unique expression, processing regulation, and regulatory network of peach (Prunus persica) miRNAs
   Zhu H, Xia R, Zhao B, An YQ, Dardick CD, Callahan AM, Liu Z
   BMC Plant Biol (2012) 12:149