Stem-loop ppe-MIR169h

Accession

MI0026089

Description

Prunus persica ppe-MIR169h precursor miRNA

Literature search

7 open access papers mention ppe-MIR169h
(22 sentences)

Sequence

685 reads, 64.0 reads per million, 20 experiments

ggaagagaugucaaacaugaaaaaaggagcuuaguuuggUAGCCAAGGAUGACUUGCCUGcagccuucuaaagaggguaaucaaucaaaaucugaaaaccccuaguuugguccucaGGCAAGCACCUUGGCUAACUcgacaaguucuuuuauuucaugcuagacucucucuucc
((((((((.(((...(((((((((((((((((.(((.(((((((((((.((.((((((((..(((......((.((((..(((.........)))..)))))).....)))...)))))))))))))))))).))).))))))))))))).)))))))...)))..))))))))

Structure

        -u   aaa       -          a   u   -        A  A        -ca   uucuaa  a    aa   auc 
ggaagaga  guc   caugaaa aaaggagcuu guu ggU AGCCAAGG UG CUUGCCUG   gcc      ag gggu  uca   a
||||||||  |||   ||||||| |||||||||| ||| ||| |||||||| || ||||||||   |||      || ||||  |||   a
ccuucucu  cag   guacuuu uuuucuugaa cag UCA UCGGUUCC AC GAACGGac   ugg      uc ccca  agu   a
        cu   auc       a          -   c   A        -  -        ucc   -uuuga  -    aa   cua 

Annotation confidence High

Genome context

chrG4: 10148140-10148313 [+]

Mature ppe-miR169h-5p

• Accession: MIMAT0031461
• Description: Prunus persica ppe-miR169h-5p mature miRNA
• Sequence: 40 - UAGCCAAGGAUGACUUGCCUG - 60
• Evidence: experimental ; Illumina [1]

Mature ppe-miR169h-3p

• Accession: MIMAT0058527
• Description: Prunus persica ppe-miR169h-3p mature miRNA
• Sequence: 117 - GGCAAGCACCUUGGCUAACU - 136
• Evidence: experimental ; unknown

References

1. PubMed ID: 22909020
   Unique expression, processing regulation, and regulatory network of peach (Prunus persica) miRNAs
   Zhu H, Xia R, Zhao B, An YQ, Dardick CD, Callahan AM, Liu Z
   BMC Plant Biol (2012) 12:149