Stem-loop ppe-MIR169i

Accession

MI0026090

Description

Prunus persica ppe-MIR169i precursor miRNA

Literature search

7 open access papers mention ppe-MIR169i
(20 sentences)

Sequence

gcaaacuuaaggaaaugaagagagggucuaacaugaagauaagagucuuguuuggUAGCCAAGGAUGACUUGCCUGCcugccuccuaauuccaagaggacagcucugguuauuuaggguucucaggcagucuccuuuggcuaacuugacagucucuucuuucucaugccagaccuuucucuucuuucuuuguuugu
((((((..(((((((.(((((((((((((..((((((((.(((((.((.(((.(((((((((((..((((.(((((...((((.......(((.(((.....)))))).......))))...)))))))))..)))))))).))).))))).))))).))).)))))..))))).)))))))))))))))))))))

Structure

      uu       u        -     aa     -   u     u  u   u   -        AU    U     Ccu    ccuaauu   a   g 
gcaaac  aaggaaa gaagagag ggucu  cauga aga aagag cu guu ggU AGCCAAGG  GACU GCCUG   gccu       cca gag a
||||||  ||||||| |||||||| |||||  ||||| ||| ||||| || ||| ||| ||||||||  |||| |||||   ||||       ||| ||| c
uguuug  uuucuuu cuucucuu ccaga  guacu uuu uucuc ga cag uca ucgguuuc  cuga cggac   uggg       ggu cuc a
      --       -        u     cc     c   c     u  -   u   a        cu    -     ucu    auuuauu   -   g 

Annotation confidence Not enough data

Genome context

chrG3: 27020399-27020594 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from ppe-MIR169i

Mature ppe-miR169i

• Accession: MIMAT0031462
• Description: Prunus persica ppe-miR169i mature miRNA
• Sequence: 56 - UAGCCAAGGAUGACUUGCCUGC - 77
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 22909020
   Unique expression, processing regulation, and regulatory network of peach (Prunus persica) miRNAs
   Zhu H, Xia R, Zhao B, An YQ, Dardick CD, Callahan AM, Liu Z
   BMC Plant Biol (2012) 12:149