Stem-loop ppe-MIR169j

Accession

MI0026091

Description

Prunus persica ppe-MIR169j precursor miRNA

Literature search

7 open access papers mention ppe-MIR169j
(22 sentences)

Sequence

1106 reads, 144.0 reads per million, 20 experiments

ggaagaaagguccuacaugaggauaaagagccuuguuuugUAGCCAAGGAUGACUUGCCUGcagccucccaagggcucucucucucucucuaaauauaauguggcgcuauagcuaagcuugguuuagaauccuugugugaucuacaGGCAGUCUCCUUGGCUACCgagacagguucuuuuaucucaugcuggaccucuucuucc
(((((((((((((..(((((((..(((((((((.((((((((((((((((.((((.(((((.((..(((((((((.............(((((((......((((......))))......))))))).)))))).).)).)).))))))))))))))))))).)))))))))))))))..)))))))..)))))).)))))))

Structure

       -      ua       au         u      -          U    U     c  cc  - -      cucucucucucuc       auaaug    gc 
ggaagaa aggucc  caugagg  aaagagccu guuuug UAGCCAAGGA GACU GCCUG ag  uc c caaggg             ucuaaau      uggc  u
||||||| ||||||  |||||||  ||||||||| |||||| |||||||||| |||| ||||| ||  || | ||||||             |||||||      ||||   
ccuucuu uccagg  guacucu  uuucuugga cagagC AUCGGUUCCU CUGA CGGac uc  ag g guuccu             agauuug      aucg  a
       c      uc       au         -      C          -    -     a  -u  u u      ------------a       guucga    au 

Annotation confidence Medium

Genome context

chrG1: 23399808-23400011 [-]

Mature ppe-miR169j-5p

• Accession: MIMAT0031463
• Description: Prunus persica ppe-miR169j-5p mature miRNA
• Sequence: 41 - UAGCCAAGGAUGACUUGCCUG - 61
• Evidence: experimental ; Illumina [1]

Mature ppe-miR169j-3p

• Accession: MIMAT0058528
• Description: Prunus persica ppe-miR169j-3p mature miRNA
• Sequence: 147 - GGCAGUCUCCUUGGCUACC - 165
• Evidence: experimental ; unknown

References

1. PubMed ID: 22909020
   Unique expression, processing regulation, and regulatory network of peach (Prunus persica) miRNAs
   Zhu H, Xia R, Zhao B, An YQ, Dardick CD, Callahan AM, Liu Z
   BMC Plant Biol (2012) 12:149