Stem-loop ppe-MIR169k

Accession

MI0026092

Description

Prunus persica ppe-MIR169k precursor miRNA

Literature search

7 open access papers mention ppe-MIR169k
(22 sentences)

Sequence

278 reads, 233.0 reads per million, 16 experiments

caaagcauugcaUGGAAAAGAAUAGAGUCUAACUgagccaaggaugaauugccggcauuguauauuaccccucaaaaugcaaucuauauuugucgaccggcaauuuguucuuggcuaugUUGGGCUCUCUUCGUUCCAUGcaaugccaug
....(((((((((((((..(((.((((((((((..((((((((((((((((((((((((((((.............)))))))...........).))))))))))))))))))))..)))))))))).))).)))))))))))))....

Structure

caaa             AA   U          Ug                    - -----------       auuac 
    gcauugcaUGGAA  GAA AGAGUCUAAC  agccaaggaugaauugccgg c           auuguau     c
    |||||||||||||  ||| ||||||||||  |||||||||||||||||||| |           |||||||     c
    cguaacGUACCUU  CUU UCUCGGGUUg  ucgguucuuguuuaacggcc g           uaacgua     c
guac             -G   C          ua                    a cuguuuauauc       aaacu 

Annotation confidence Medium

Genome context

chrG1: 5660948-5661097 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from ppe-MIR169k

Mature ppe-miR169k-5p

• Accession: MIMAT0031464
• Description: Prunus persica ppe-miR169k-5p mature miRNA
• Sequence: 13 - UGGAAAAGAAUAGAGUCUAACU - 34
• Evidence: experimental ; Illumina [1]

Mature ppe-miR169k-3p

• Accession: MIMAT0058529
• Description: Prunus persica ppe-miR169k-3p mature miRNA
• Sequence: 120 - UUGGGCUCUCUUCGUUCCAUG - 140
• Evidence: experimental ; unknown

References

1. PubMed ID: 22909020
   Unique expression, processing regulation, and regulatory network of peach (Prunus persica) miRNAs
   Zhu H, Xia R, Zhao B, An YQ, Dardick CD, Callahan AM, Liu Z
   BMC Plant Biol (2012) 12:149