Stem-loop ppe-MIR171d

Accession

MI0026094

Description

Prunus persica ppe-MIR171d precursor miRNA

Literature search

6 open access papers mention ppe-MIR171d
(19 sentences)

Sequence

984 reads, 38.0 reads per million, 11 experiments

caaguagacauggUGUGAUAUUGGUUCGGUUCAUaucuuuuauacuuuuuggauauauccauccauccauucauccauccauccauccaucacacuucacgaaucacaaacaaagaugaCGAGCCGAAUCAAUAUCACUCUuguaugcuug
((((((.(((.((.((((((((((((((((((.(((((((.........(((((......)))))...((((............................)))).......)))))))..)))))))))))))))))).))))).))))))

Structure

      g   u  U                  -A       -------------------------------------uauacuuuu     au 
caagua aca gg GUGAUAUUGGUUCGGUUC  Uaucuuu                                              uggau  a
|||||| ||| || ||||||||||||||||||  |||||||                                              |||||   
guucgu ugu UC CACUAUAACUAAGCCGAG  guagaaa                                              accua  u
      a   -  U                  Ca       caaacacuaagcacuucacacuaccuaccuaccuaccuacuuaccu     cc 

Annotation confidence High

Genome context

chrG2: 29621754-29621904 [-]

Mature ppe-miR171d-5p

• Accession: MIMAT0031466
• Description: Prunus persica ppe-miR171d-5p mature miRNA
• Sequence: 14 - UGUGAUAUUGGUUCGGUUCAU - 34
• Evidence: experimental ; Illumina [1]

Mature ppe-miR171d-3p

• Accession: MIMAT0031467
• Description: Prunus persica ppe-miR171d-3p mature miRNA
• Sequence: 120 - CGAGCCGAAUCAAUAUCACUCU - 141
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 22909020
   Unique expression, processing regulation, and regulatory network of peach (Prunus persica) miRNAs
   Zhu H, Xia R, Zhao B, An YQ, Dardick CD, Callahan AM, Liu Z
   BMC Plant Biol (2012) 12:149