Stem-loop ppe-MIR172a

Accession

MI0026095

Description

Prunus persica ppe-MIR172a precursor miRNA

Literature search

9 open access papers mention ppe-MIR172a
(38 sentences)

Sequence

6964 reads, 1882.0 reads per million, 20 experiments

agucguuguuugCGGGCGUAGCAUCAUCAAGAUucacgcacaugcaauuaacuugaaaguuucucucuuugccaaaguuucuuucaaagugAGAAUCUUGAUGAUGCUGCAUcggcaauaaaccacu
(((.(((..((((.((.((((((((((((((((((..((....)).....(((((((((...((...........))...))))).))))..)))))))))))))))))).)).))))..))).)))

Structure

   c   gu    G  C                  acgcacaugcaauua    -     uuu  cucu 
agu guu  uugC GG GUAGCAUCAUCAAGAUuc               acuu gaaag   cu    u
||| |||  |||| || ||||||||||||||||||               |||| |||||   ||    u
uca caa  aacg cU CGUCGUAGUAGUUCUAAG               ugaa cuuuc   ga    g
   c   au    g  A                  -------------Ag    a     uuu  aacc 

Annotation confidence Medium

Genome context

chrG6: 7627706-7627832 [-]

Mature ppe-miR172a-5p

• Accession: MIMAT0031468
• Description: Prunus persica ppe-miR172a-5p mature miRNA
• Sequence: 13 - CGGGCGUAGCAUCAUCAAGAU - 33
• Evidence: experimental ; Illumina [1]

Mature ppe-miR172a-3p

• Accession: MIMAT0031469
• Description: Prunus persica ppe-miR172a-3p mature miRNA
• Sequence: 92 - AGAAUCUUGAUGAUGCUGCAU - 112
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 22909020
   Unique expression, processing regulation, and regulatory network of peach (Prunus persica) miRNAs
   Zhu H, Xia R, Zhao B, An YQ, Dardick CD, Callahan AM, Liu Z
   BMC Plant Biol (2012) 12:149