Stem-loop ppe-MIR172c

Accession

MI0026097

Description

Prunus persica ppe-MIR172c precursor miRNA

Literature search

9 open access papers mention ppe-MIR172c
(37 sentences)

Sequence

559 reads, 43.0 reads per million, 19 experiments

gguGCGGCAUCAUCAAGAUUCACAUacuuuagugaggggucuaccuuuaucgaucgaguuaauugguacuacuaacaccaccaauugauuuuuguacucgaacuuccuuuaguacucgaaagguaguuccuuugaacuuugaagugGGAAUCUUGAUGAUGCUGCAUc
(((((((((((((((((((((.(.(((((((((((((((.(((((((..((((..((((((((((((............))))))))))))..(((((.((......)).)))))))))))))))).)))))))....))))))))))))))))))))))))))))))

Structure

                     A A        ----       u       ua    ----------------------uc            acuac 
gguGCGGCAUCAUCAAGAUUC C Uacuuuag    ugagggg cuaccuu  ucga                        gaguuaauuggu     u
||||||||||||||||||||| | ||||||||    ||||||| |||||||  ||||                        ||||||||||||      
cUACGUCGUAGUAGUUCUAAG G gugaaguu    guuuccu gauggaa  agcu                        uuuaguuaacca     a
                     - -        ucaa       u       --    caugauuuccuucaagcucauguu            ccaca 

Annotation confidence Medium

Genome context

chrG6: 4926841-4927008 [-]

Mature ppe-miR172c-5p

• Accession: MIMAT0058532
• Description: Prunus persica ppe-miR172c-5p mature miRNA
• Sequence: 4 - GCGGCAUCAUCAAGAUUCACAU - 25
• Evidence: experimental ; unknown

Mature ppe-miR172c-3p

• Accession: MIMAT0031471
• Description: Prunus persica ppe-miR172c-3p mature miRNA
• Sequence: 147 - GGAAUCUUGAUGAUGCUGCAU - 167
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 22909020
   Unique expression, processing regulation, and regulatory network of peach (Prunus persica) miRNAs
   Zhu H, Xia R, Zhao B, An YQ, Dardick CD, Callahan AM, Liu Z
   BMC Plant Biol (2012) 12:149