Stem-loop ppe-MIR172d

Accession

MI0026098

Description

Prunus persica ppe-MIR172d precursor miRNA

Literature search

10 open access papers mention ppe-MIR172d
(38 sentences)

Sequence

237 reads, 25.0 reads per million, 19 experiments

agucauuguuugcggauGGAGCAUCAUCAAGAUUCACAauuucuuggggcuagcugcuuugcuauuggcccuuugaugauaugGGAAUCUUGAUGAUGCUGCAGcggcaauaaauggcu
(((((((..((((.(.((.((((((((((((((((.(((((((..((((((((..((...))..))))))))..)).))).)).)))))))))))))))).)).).))))..)))))))

Structure

       gu    g a  G                A  -   -  uu        cu  u 
agucauu  uugc g uG AGCAUCAUCAAGAUUC CA auu uc  ggggcuag  gc  
|||||||  |||| | || |||||||||||||||| || ||| ||  ||||||||  || u
ucgguaa  aacg c AC UCGUAGUAGUUCUAAG gu uag ag  ucccgguu  cg  
       au    g G  G                G  a   u  uu        au  u 

Annotation confidence Medium

Genome context

chrG2: 25860595-25860713 [+]

Mature ppe-miR172d-5p

• Accession: MIMAT0058533
• Description: Prunus persica ppe-miR172d-5p mature miRNA
• Sequence: 18 - GGAGCAUCAUCAAGAUUCACA - 38
• Evidence: experimental ; unknown

Mature ppe-miR172d-3p

• Accession: MIMAT0031472
• Description: Prunus persica ppe-miR172d-3p mature miRNA
• Sequence: 84 - GGAAUCUUGAUGAUGCUGCAG - 104
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 22909020
   Unique expression, processing regulation, and regulatory network of peach (Prunus persica) miRNAs
   Zhu H, Xia R, Zhao B, An YQ, Dardick CD, Callahan AM, Liu Z
   BMC Plant Biol (2012) 12:149