Stem-loop ppe-MIR390

Accession

MI0026099

Description

Prunus persica ppe-MIR390 precursor miRNA

Literature search

9 open access papers mention ppe-MIR390
(50 sentences)

Sequence

7581 reads, 409.0 reads per million, 20 experiments

cuguaAAGCUCAGGAGGGAUAGCGCCauaugaacaaaaugguuuaauuuauauuaggcauuuguuuuggCGCUAUCUAUCCUGAGUUUCAugg
((((.((((((((((.(((((((((((...(((((((...(((((((....))))))).)))))))))))))))))).)))))))))).))))

Structure

    a          G           uau       aug       u 
cugu AAGCUCAGGA GGAUAGCGCCa   gaacaaa   guuuaau u
|||| |||||||||| |||||||||||   |||||||   |||||||  
gguA UUUGAGUCCU UCUAUCGCggu   uuuguuu   cggauua a
    C          A           ---       --a       u 

Annotation confidence High

Genome context

chrG6: 3479635-3479727 [-]

Mature ppe-miR390-5p

• Accession: MIMAT0031473
• Description: Prunus persica ppe-miR390-5p mature miRNA
• Sequence: 6 - AAGCUCAGGAGGGAUAGCGCC - 26
• Evidence: experimental ; Illumina [1]

Mature ppe-miR390-3p

• Accession: MIMAT0058534
• Description: Prunus persica ppe-miR390-3p mature miRNA
• Sequence: 70 - CGCUAUCUAUCCUGAGUUUCA - 90
• Evidence: experimental ; unknown

References

1. PubMed ID: 22909020
   Unique expression, processing regulation, and regulatory network of peach (Prunus persica) miRNAs
   Zhu H, Xia R, Zhao B, An YQ, Dardick CD, Callahan AM, Liu Z
   BMC Plant Biol (2012) 12:149