Stem-loop ppe-MIR393a

Accession

MI0026100

Description

Prunus persica ppe-MIR393a precursor miRNA

Literature search

9 open access papers mention ppe-MIR393a
(26 sentences)

Sequence

24025 reads, 985.0 reads per million, 20 experiments

uagaggaagCAUCCAAAGGGAUCGCAUUGAucccaacuagcuaucucuuccaugguuuaauuuggAUCAUGCUAUCCCUUUGGAUAucuccuuug
(((((((...((((((((((((.((((.(((((.....((((((.......))))))......))))))))).))))))))))))...)))))))

Structure

       agC            C    U     -caacu      cu 
uagagga   AUCCAAAGGGAU GCAU GAucc      agcuau  c
|||||||   |||||||||||| |||| |||||      ||||||  u
guuuccu   UAGGUUUCCCUA CGUA CUAgg      uuggua  u
       cuA            U    -     uuuaau      cc 

Annotation confidence High

Genome context

chrG2: 26224921-26225015 [+]

Mature ppe-miR393a-5p

• Accession: MIMAT0031474
• Description: Prunus persica ppe-miR393a-5p mature miRNA
• Sequence: 10 - CAUCCAAAGGGAUCGCAUUGA - 30
• Evidence: experimental ; Illumina [1]

Mature ppe-miR393a-3p

• Accession: MIMAT0058535
• Description: Prunus persica ppe-miR393a-3p mature miRNA
• Sequence: 66 - AUCAUGCUAUCCCUUUGGAUA - 86
• Evidence: experimental ; unknown

References

1. PubMed ID: 22909020
   Unique expression, processing regulation, and regulatory network of peach (Prunus persica) miRNAs
   Zhu H, Xia R, Zhao B, An YQ, Dardick CD, Callahan AM, Liu Z
   BMC Plant Biol (2012) 12:149