Stem-loop ppe-MIR394b

Accession

MI0026102

Description

Prunus persica ppe-MIR394b precursor miRNA

Literature search

3 open access papers mention ppe-MIR394b
(4 sentences)

Sequence

42556 reads, 24417.0 reads per million, 20 experiments

ggguuucucaggggccuuguugcagaggcaauUUGGCAUUCUGUCCACCUCCauauucacuaguacacauagaagaaguuucuuucuuuuauuuuacaagcucuggAGGUGGUCAGCAUGUCAAACUggcucuguaaauuucucucugagaaacuc
((((((((((((((.....((((((((.((.((((((((.(((.(((((((((......((.(((...((((((((((....))))))))))..))).))...))))))))).))).)))))))).)).)))))))).....))))))))))))))

Structure

              ccuug        g  a        U   U         uauuca  a   cac          u 
ggguuucucagggg     uugcagag ca uUUGGCAU CUG CCACCUCCa      cu gua   auagaagaag u
||||||||||||||     |||||||| || |||||||| ||| |||||||||      || |||   ||||||||||  
cucaaagagucucu     aaugucuc gU AAACUGUA GAC GGUGGAggu      ga cau   uauuuucuuu u
              cuuua        g  C        C   U         ---cuc  a   -uu          c 

Annotation confidence High

Genome context

chrG1: 46215543-46215698 [-]

Mature ppe-miR394b-5p

• Accession: MIMAT0031476
• Description: Prunus persica ppe-miR394b-5p mature miRNA
• Sequence: 33 - UUGGCAUUCUGUCCACCUCC - 52
• Evidence: experimental ; Illumina [1]

Mature ppe-miR394b-3p

• Accession: MIMAT0058537
• Description: Prunus persica ppe-miR394b-3p mature miRNA
• Sequence: 107 - AGGUGGUCAGCAUGUCAAACU - 127
• Evidence: experimental ; unknown

References

1. PubMed ID: 22909020
   Unique expression, processing regulation, and regulatory network of peach (Prunus persica) miRNAs
   Zhu H, Xia R, Zhao B, An YQ, Dardick CD, Callahan AM, Liu Z
   BMC Plant Biol (2012) 12:149