Stem-loop ppe-MIR395c

Accession

MI0026105

Description

Prunus persica ppe-MIR395c precursor miRNA

Literature search

3 open access papers mention ppe-MIR395c
(14 sentences)

Sequence

4837 reads, 3693.0 reads per million, 20 experiments

gucaagugucacugagaGUUCCCUUGACCACUUCAUugggaaauaauucuuucugaucaauuauauaucuuaCUGAAGUGUUUGGGGGAACuccuaguggcauuugau
((((((((((((((.((((((((((((.(((((((.(((((.(((((((.....))...)))))...))))).))))))).)))))))))))).))))))))))))))

Structure

              a            C       U     --a     ---  u 
gucaagugucacug gaGUUCCCUUGA CACUUCA uggga   auaau   uc u
|||||||||||||| |||||||||||| ||||||| |||||   |||||   || u
uaguuuacggugau cuCAAGGGGGUU GUGAAGU auucu   uauua   ag c
              c            U       C     aua     acu  u 

Annotation confidence Not enough data

Genome context

chrG1: 27764279-27764386 [-]

Clustered miRNAs

6 other miRNAs are < 10 kb from ppe-MIR395c

Mature ppe-miR395c-5p

• Accession: MIMAT0058538
• Description: Prunus persica ppe-miR395c-5p mature miRNA
• Sequence: 18 - GUUCCCUUGACCACUUCAU - 36
• Evidence: experimental ; unknown

Mature ppe-miR395c-3p

• Accession: MIMAT0031481
• Description: Prunus persica ppe-miR395c-3p mature miRNA
• Sequence: 73 - CUGAAGUGUUUGGGGGAAC - 91
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 22909020
   Unique expression, processing regulation, and regulatory network of peach (Prunus persica) miRNAs
   Zhu H, Xia R, Zhao B, An YQ, Dardick CD, Callahan AM, Liu Z
   BMC Plant Biol (2012) 12:149